PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_20816_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 137aa    MW: 15925.5 Da    PI: 9.6025
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_20816_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.5e-101438226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    ++++C+f+++ G C++GdrC++ H 
  Neem_20816_f_2 14 DRVNCPFYFKIGACRHGDRCSRLHN 38
                    6899********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0651240IPR000571Zinc finger, CCCH-type
SMARTSM003560.00681339IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-81438IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-51641IPR000571Zinc finger, CCCH-type
PRINTSPR018486.1E-291837IPR009145U2 auxiliary factor small subunit
PRINTSPR018486.1E-293757IPR009145U2 auxiliary factor small subunit
PRINTSPR018486.1E-297590IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP  60
GVDAQGQPID PRKIQEHFED FYEDIFRSSQ DPGTFRRLLR GYLRRAHLKR KIKQPPLCKL  120
CKEDFTLAVQ LLPISLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A3e-27199194Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015575795.16e-59PREDICTED: splicing factor U2af small subunit B
RefseqXP_015575808.16e-59PREDICTED: splicing factor U2af small subunit B
RefseqXP_015575814.16e-59PREDICTED: splicing factor U2af small subunit B
RefseqXP_015575820.16e-59PREDICTED: splicing factor U2af small subunit B
SwissprotQ9S7091e-58U2AFA_ARATH; Splicing factor U2af small subunit A
TrEMBLB9R8U86e-59B9R8U8_RICCO; U2 snrnp auxiliary factor, small subunit, putative
STRINGVIT_18s0122g00480.t012e-58(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2112344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44785.14e-31C3H family protein